http://dnagarden.hgc.jp/en/ 2012-02-23T10:10:08+09:00 http://dnagarden.hgc.jp/en/ http://dnagarden.hgc.jp/en/lib/tpl/arctic/images/favicon.ico text/html 2012-02-19T11:45:41+09:00 mlabadm http://dnagarden.hgc.jp/en/doku.php/publications?rev=1329619541&do=diff 2012 * Kojima K, Imoto S, Yamaguchi R, Fujita A, Yamauchi M, Gotoh N, Miyano S. Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genomics. 13(Suppl 1):S6, 2012. * Okayama H, Kohno T, Ishii1 Y, Shimada Y, Shiraishi K, Iwakawa R, Furuta K, Tsuta K, Shibata T, Yamamoto S, Watanabe S, Sakamoto H, Kumamoto K, Takenoshita S, Gotoh N, Mizuno H, Sarai A, Kawano S, Yamaguchi R, Miyano S, Yoko… text/html 2011-12-27T13:09:01+09:00 mlabadm http://dnagarden.hgc.jp/en/doku.php/members?rev=1324958941&do=diff Laboratory of DNA Information AnalysisProfessorSatoru MiyanoAssociate ProfessorSeiya ImotoAssistant ProfessorMasao NagasakiTechnicianAyumu SaitoProject Assistant ProfessorYoshinori TamadaProject Assistant ProfessorTeppei ShimamuraPost-Doctoral FellowAtsushi NiidaPost-Doctoral FellowShuichi KawanoPost-Doctoral FellowChen LiPost-Doctoral FellowAndre FujitaPost-Doctoral FellowGeorg TremmelPost-Doctoral FellowAlok SharmaTechnical StaffEmi IkedaTechnical StaffKazuko UenoTechnical StaffYayoi SekiyaSec… text/html 2010-11-12T04:59:16+09:00 mlabadm http://dnagarden.hgc.jp/en/doku.php/home?rev=1289505556&do=diff [メンバー] * Dec. 1 2010: We have released the open source large-scale gene network estimation software SiGN-SSM. Please visit the SiGN-SSM web site for details. * Nov. 26 2010: Alok Sharma joined our laboratory. * Jun. 1 2010: Georg Tremmel joined our laboratory. * Apr. 1 2010: Shuichi Kawano joined our laboratory. * Feb. 4 2010: The Second NUS-UT Workshop on Computational Systems Biology (Date: February 22-23, 2010, Place: The Second Building, The Institute of Medical Science, The Unive… text/html 2010-11-02T08:15:00+09:00 mlabadm http://dnagarden.hgc.jp/en/doku.php/software?rev=1288653300&do=diff SiGN-SSM is open source gene network estimation software able to run in parallel on PCs and massively parallel supercomputers. The software estimates a state space model (SSM), that is a statistical dynamic model suitable for analyzing short time and/or replicated time series gene expression profiles. SiGN-SSM implements a novel parameter constraint effective to stabilize the estimated models. Also, by using the supercomputers, it is able to determine the gene network structure by the statistica…